Grinn

Documentation

Function	Description
combineNetwork	Combine a grinn network to a provided network
convertToGrinnID	Convert other database IDs to Neo4j internal IDs and grinn IDs
fetchCorrGrinnNetwork	Compute a weighted correlation network and expand the network with information from Grinn internal database
fetchDiffCorrGrinnNetwork	Compute a differential correlation network and expand the network with information from Grinn internal database
fetchPtCorrGrinnNetwork	Compute a partial correlation network and expand the network with information from Grinn internal database
fetchGrinnCorrNetwork	Reconstruct a grinn network queried from Grinn internal database, then compute and combine with a weighted correlation network
fetchGrinnDiffCorrNetwork	Reconstruct a grinn network queried from Grinn internal database, then compute and combine with a differential correlation network
fetchGrinnModuNetwork	Reconstruct a grinn network queried from Grinn internal database, then compute and combine with a network module correlated to a phenotypic feature
fetchGrinnPtCorrNetwork	Combine a grinn network queried from Grinn internal database to a partial correlation network
fetchGrinnNetwork	Reconstruct a biological network (grinn network) using information from Grinn internal database
fetchModuGrinnNetwork	Compute a network module correlated to a phenotypic feature and expand the network with information from Grinn internal database
getGrinnDb	Get Grinn database location
setGrinnDb	Set Grinn database location
grinnShiny	Start GUI