Metabox

A toolbox for metabolomic data analysis, interpretation and integrative exploration

View the Project on GitHub kwanjeeraw/metabox

Description

An R-based web applications for data processing, statistical analysis, integrative visual exploration and functional analysis with several approaches (such as functional class scoring, overrepresentation analysis and WordCloud generation).

Version: 1.2 (01 December 2016)

Important features

Installation and Running metabox

  1. Require R software
  2. Require opencpu
  3. Install metabox using the following commands
#Install devtools R package, if not exist
install.packages('devtools', repos="http://cran.rstudio.com/")
library(devtools)

#Install dependent packages
source('https://bioconductor.org/biocLite.R')
biocLite(c('impute','preprocessCore','GO.db','AnnotationDbi','WGCNA','piano','qpgraph','BioNet','ChemmineR'))

#Install metabox
install_github('kwanjeeraw/metabox')

#Install OpenCPU single-user server
install.packages("opencpu")
library(opencpu)

## Run metabox on a web browser
opencpu$browse("library/metabox/www")

Documentation

Click here to download PDF file

License

GNU General Public License (v3)