Metabox

Description

An R-based web applications for data processing, statistical analysis, integrative visual exploration and functional analysis with several approaches (such as functional class scoring, overrepresentation analysis and WordCloud generation).

Version: 1.2 (01 December 2016)

Important features

• Data normalization and data transformation
• Univariate statistical analyses with hypothesis testing procedures that are automatically selected based on study designs
• Joint and interactive visualization of genes, proteins and metabolites in different combinations of networks
• Calculation of data-driven networks using correlation-based approaches
• Calculation of chemical structure similarity networks from substructure fingerprints
• Functional interpretation with overrepresentation analysis, functional class scoring and WordCloud generation

Installation and Running metabox

1. Require R software
2. Require opencpu
3. Install metabox using the following commands

#Install devtools R package, if not exist
install.packages('devtools', repos="http://cran.rstudio.com/")
library(devtools)

#Install dependent packages
source('https://bioconductor.org/biocLite.R')
biocLite(c('impute','preprocessCore','GO.db','AnnotationDbi','WGCNA','piano','qpgraph','BioNet','ChemmineR'))

#Install metabox
install_github('kwanjeeraw/metabox')

#Install OpenCPU single-user server
install.packages("opencpu")
library(opencpu)

## Run metabox on a web browser
opencpu$browse("library/metabox/www")

Documentation

Click here to download PDF file

License

GNU General Public License (v3)